HMMDupFinder: A Framework for Finding Duplicons

Given a set of large repeat sequences (e.g., segmental duplications and copy number variations), the HMMDupFinder aims to identity the small subrepeat unis (termed duplicons) within the large repeats. The developed programs within HMMDupFinder are implemented in C++ and encapsulated via shell script on Linux, which are freely available for academic use.


Genomics Research Center, Academia Sinica, Taiwan.
Department of Computer Science and Information Engineering, National Chung Cheng University, Taiwan.

For any question, please contact

Trees-Juen Chuang:, or

Yao-Ting Huang: